Reddit's 100 Favorite 90's Games

Ocarina of Time was remade on the 3DS.

Reddit included Pokemon Blue.

Pokemon Red was remade into Pokemon FireRed Version for the GBA.

A Link to the Past was originally released on the Super Famicom.
When asked what game he'd most like to remake on the 3DS Shigeru Miyamoto said

I think A Link To The Past. Do you remember Xevious? It’s two-layered and I really wanted to create that at the time. So to see Link To The Past in two layers would be quite attractive for me (Edge).

Animated scenes were added to the PS1 version and are on the DS version.

Star Fox 64 was remade for the 3DS.

The Gamecube version updates the graphics from the original PS1 game, but there are some voice acting changes.

The game was remade in HD.

Final Fantasy Tactics was remade for the PSP.